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Update Troubleshooting
authored
Jan 25, 2021
by
Alain O' Miniussi
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@@ -23,3 +23,28 @@ You need to remove the obsolete commands from your login resource files.
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@@ -23,3 +23,28 @@ You need to remove the obsolete commands from your login resource files.
*
If that fail, the following command might help finding those files:
`egrep '\bmodule\b' .??*`
.
*
If that fail, the following command might help finding those files:
`egrep '\bmodule\b' .??*`
.
Then, setup your environment according to the
[
Software Environment
](
Licallo/Software
Environment) page.
Then, setup your environment according to the
[
Software Environment
](
Licallo/Software
Environment) page.
## MPI
### I get an error in `PMPI_Init` with module **intel-gnu8-runtime/19.0.5.281** and **impi**
**Symptom**
If you are using
`mpirun/mpiexec`
in that context, the PMI2 library comes in the way and causes problem.
The error message will look like:
```
Abort(567055) on node 0 (rank 0 in comm 0): Fatal error in PMPI_Init: Other MPI error, error stack:
MPIR_Init_thread(703):
MPID_Init(739).......: PMI_Init returned -1
```
**Solution**
In your script, before launching your code, unset
**I_MPI_PMI_LIBRARY**
:
```
...
unset I_MPI_PMI_LIBRARY
# Run the code, could use mpiexec
mpirun -n $SLURM_NTASKS ./dice
```
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