Update MPI jobs authored by Alain O' Miniussi's avatar Alain O' Miniussi
...@@ -45,7 +45,32 @@ This is 3, I got 4, I'm so talented ...@@ -45,7 +45,32 @@ This is 3, I got 4, I'm so talented
``` ```
## Script explanation ## Script explanation
We are now describing the Slurm script [run.slurm](https://gitlab.oca.eu/DSI/HPC/-/blob/master/SLURM/MPI/build.sh). Note that we will run 2 task per node to illustrate the fact that the job will use more than one node, although this toy example would be happy with one job per core. We are now describing the Slurm script [run.slurm](https://gitlab.oca.eu/DSI/HPC/-/blob/master/SLURM/MPI/build.sh). Note that we will run 2 task per node to illustrate the fact that the job will use more than one node, although this toy example would be happy with one job per core.
``` ```
#!/bin/bash
#SBATCH --job-name=Dice # job name
#SBATCH --ntasks=4 # Total number of MPI processes, could be deduced
#SBATCH --ntasks-per-node=2 # Total number of MPI processes per node
#SBATCH --time=00:10:00 # Maximum compute time (HH:MM:SS)
#SBATCH --output=log-dice-%j.out # Ouput file (%j is the job's id)
#SBATCH --error=log-dice-%j.err # Error file
# Go to the submit dir
cd ${SLURM_SUBMIT_DIR}
# Cleanup the environment that could be inherited
module purge
# Load the needed modules, depends on your application
module load intel-gnu8-runtime/19.1.2.254
module load intelpython3 impi
module load boost
# Be verbose
set -x
# Run the code, one could also use mpiexec or mpirun
srun --mpi=pmi2 ./dice
``` ```
[^1]: which has an impact in term of Slurm integration. [^1]: which has an impact in term of Slurm integration.
\ No newline at end of file