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Update Running the jobs authored by Alain O' Miniussi's avatar Alain O' Miniussi
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...@@ -9,24 +9,24 @@ Usage examples are provided in the [cluster specific](Home) pages of this wiki, ...@@ -9,24 +9,24 @@ Usage examples are provided in the [cluster specific](Home) pages of this wiki,
# Submitting differents types of jobs # Submitting differents types of jobs
All the examples are [provided in this repository](/home#examples). All the examples are [provided in this repository](/home#examples).
## [SLURM basics/sequential jobs](Running-the-jobs/SLURM basics) * [SLURM basics/sequential jobs](Running-the-jobs/SLURM basics)
How to get a simple job done on the cluster, how to monitor your jobs etc. How to get a simple job done on the cluster, how to monitor your jobs etc.
## [Multi threaded jobs/shared memory parallelism](Running-the-jobs/Multi-threaded-jobs) * [Multi threaded jobs/shared memory parallelism](Running-the-jobs/Multi-threaded-jobs)
How to run a multi threaded jobs on a node. How to run a multi threaded jobs on a node.
## [MPI jobs/multi node parallelism](Running-the-jobs/MPI-jobs) * [MPI jobs/multi node parallelism](Running-the-jobs/MPI-jobs)
How to run and place MPI jobs. How to run and place MPI jobs.
## [Interactive sessions](Running-the-jobs/Interactive sessions) * [Interactive sessions](Running-the-jobs/Interactive sessions)
How to connect to a node for an interactive session. How to connect to a node for an interactive session.
# Controlling/querying jobs # Controlling/querying jobs
## [When is my job going to start](Running-the-jobs/When is my job going to start) * [When is my job going to start](Running-the-jobs/When is my job going to start)
# Tips and tricks # Tips and tricks
## [Pack sequential arrays of jobs](Running-the-jobs/Pack sequential arrays of jobs) * [Pack sequential arrays of jobs](Running-the-jobs/Pack sequential arrays of jobs) to efficiently handle job array
## [Use local copies for IO intensive work](Running-the-jobs/Use local copies for IO intensive work) * [Use local copies for IO intensive work](Running-the-jobs/Use local copies for IO intensive work)
How to use local file access when the share disk space cannot handle the load. How to use local file access when the share disk space cannot handle the load.
## [Job dependencies](Running-the-jobs/Job Dependencies) * [Job dependencies](Running-the-jobs/Job Dependencies) to handle restarts and multi stage jobs
## [Special tools](Running-the-jobs/Special Tools) * [Special tools](Running-the-jobs/Special Tools)
Running Mathematica etc.. Running Mathematica etc..
[^1]: there might be more than one actual machine to ensure load balancing and fault tolerance. But you only need to remember the logical name. Like *licallo.oca.eu* for the HPC cluster. [^1]: there might be more than one actual machine to ensure load balancing and fault tolerance. But you only need to remember the logical name. Like *licallo.oca.eu* for the HPC cluster.
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